Bio Sci Chapter 2 Lesson 1 Module 3
Bio Sci Chapter 2 Lesson 1 Module 3
Module
in
BIO SCI 101C
GENERAL BIOLOGY
College of Agriculture
BSA
2
VIMBEE C. ALIPOON-ERESUELA
Instructor 1
TABLE OF CONTENTS
Page
Cover page 1
Title Page 2
Table of Contents 3
Instruction to the Users 4
Introduction 5
Chapter
Title of the Chapter 6
Overview 6
Learning outcomes 6
Pre-test 7
Lesson 1 9
A. Learning outcomes 9
B. Time Allotment 9
C. Discussion 9
a. Introduction 9
b. Matter 10
c. Elements 10
d. The Atom 11
e. Compound and molecules 16
D. Activities/Exercises 21
E. Evaluation/Post-test 21
References
Greetings and Student Information
Back cover (WPU- Vision 2020, Mission and Core Values
INTRODUCTION
classroom teaching and learning delivery. The instructor will facilitate and explain the
module to the students to achieve its expected learning outcomes, activities and to
The General Biology introduces students to the field of biology, the study of life.
After tackling what differentiates living systems from non-living systems, the origins
and history of life on Earth are discussed. The course covers the diversity of form and
This chapter focuses on The Basis of Life. It aims to give basic understanding of
chemical basis of life, chemical compound in living organism and cell function and
structure,
CHAPTER 2
Overview
Module III covers the Chemical basis of life. This module includes three lessons:
Lesson 1 – chemical basis of life 2- chemical compound in living cells; and 3- cell
function and structure
The elements carbon, hydrogen, nitrogen, oxygen, sulfur, and phosphorus are
the key building blocks of the chemicals found in living things. They form the
carbohydrates, nucleic acids, proteins, and lipids (all of which will be defined later in
this chapter) that are the fundamental molecular components of all organisms. In this
chapter, we will discuss these important building blocks and learn how the unique
properties of the atoms of different elements affect their interactions with other at oms
to form the molecules of life.
Food provides an organism with nutrients—the matter it needs to survive.
Many of these critical nutrients come in the form of biological macromolecules, or
large molecules necessary for life. These macromolecules are built from different
combinations of smaller organic molecules. What specific types of biological
macromolecules do living things require? How are these molecules formed? What
functions do they serve? In this chapter, we will explore these questions.
Learning outcomes
Discuss atoms and elements as the chemical basis of life, describe their
behavior, roles and characteristics and identify the chemical elements
present in living organism
Define the cells and its function, enumerate the different subcellular
structures and distinguish the different cell structures in plans and
animals
Describe the cell cycle and what transpires during each stage of the cycle.
Pre-test
Directions: Answer the pre-test with honesty. This not graded exam but please do you
best to evaluate your fore knowledge. Do this in a separate sheet.
__________2. the smallest component of an element that retains all of the chemical
properties of that element.
__________3. the smallest part of a compound that still has the properties of the
particular compound.
__________4. are atoms of the same element that differ in the number of neutrons.
__________5. a substance that cannot be broken down into simpler substances with
different properties by ordinary chemical means
2. The smallest particle of an element that still exhibits the chemical characteristics
of that
element is a(n)
a. proton.
b. atom.
c. orbital.
d. chemical bond.
3. Electrons
a. are the subatomic particles most involved in bonding behavior of atoms.
b. have a positive charge of one.
c. comprises the majority of the mass of an atom.
d. does not participate in the bonding of atoms.
a. weight.
b. density.
c. volume.
d. mass.
9. A neutral atom will become a cation if it
a. gains electrons.
b. loses protons.
c. gains protons.
d. loses electrons.
LESSON 1
A. Learning outcomes:
C. Discussion
Introduction
At its most fundamental level, life is made up of matter. Matter occupies space
and has mass. All matter is composed of elements, substances that cannot be broken
down or transformed chemically into other substances. Each element is made of
atoms, each with a constant number of protons and unique properties. A total of 118
elements have been defined; however, only 92 occur naturally, and fewer than 30 are
found in living cells. The remaining 26 elements are unstable and, therefore, do not
exist for very long or are theoretical and have yet to be detected.
Each element is designated by its chemical symbol (such as H, N, O, C, and
Na), and possesses unique properties. These unique properties allow elements to
combine and to bond with each other in specific ways.
Organisms (living things) are made of chemicals. Organisms are made of the
same chemicals as inanimate (non-living) things. In other words, many of the same
chemicals that make up your body can be found in rocks, water, asphalt, steel, etc.
Everything in and around you is "chemistry". You might actually call your
physical body a "bag of chemical'"
Matter
Matter exists in only 3 distinct states. One state can be converted to another by
addition or subtraction of heat.
Elements
All matter (both living and non-living) is made up of elements. Our textbook
defines an element as -a substance that cannot be broken down into simpler
substances with different properties by ordinary chemical means. A property is this
definition is a physical or chemical trait such as melting point, solubility, density, etc).
The Atom
Figure 1. Atoms are made up of protons and neutrons located within the nucleus, and electrons surrounding
the nucleus.
The atomic theory states that elements consist of tiny particles called atoms.
The word atom comes from the Greek word "atomos" which means uncut or
indivisible
An atom is the smallest component of an element that retains all of the
chemical properties of that element.
Atoms are small. A line of about 1 million would fit in the period at the end of a
sentence in our textbook. 100 million arranged in a row would measure about 1 inch.
Atomic Symbols
Scientists have developed a 1 or 2 letter symbol as an abbreviation for each kind
of atom.
These abbreviations are called the Atomic Symbol. Note that the Atomic Symbol
is also used as the symbol for the corresponding element.
Hydrogen-H
Radon -Ra
Sodium-Na
Carbon -C
Physicist’s have split atoms apart and identified over 100 kinds of
subatomic particles. We will only study 3.
Protons
Neutrons
Electrons
Protons
are found in the nucleus of the atom
possess a positive + charge.
Neutrons
are found in the nucleus of the atom
possess a neutral 0 charge.
Electrons
Are found moving around the nucleus in an area often called the
electron shell.
Modem theory is that electrons form a haze or cloud about the
atomic nucleus.
Electrons have a negative -charge.
Electrons travel around a positively + charged nucleus at varying
distances from the nucleus at high velocities.
“if an atom were the size of a football field. The nucleus would
be the size of a symbol/ at the 50-yard line in the center of the
field, electrons would be tiny specks whirling around the
upper stands”
All atoms of an element have the same number of protons in the nucleus.
The Atomic Number is the number of protons in the atom's nucleus, what is the
Atomic Number for Helium? (2)
The Mass Number is the number of protons and neutrons in the atom's nucleus.
Using our handout, what is the Mass Number for Helium? (4)
For a given atom, the Atomic Symbol, Atomic Number, and Mass Number are
written as follows:
Why are these two values important in biology? They help predict how
substances might behave in individual cells, in multi-cellular organisms, and in
the environment.
An atom is electrically neutral when the (+) positive charges of protons in the
nucleus equals the (-) negative charges of electrons orbiting about the nucleus.
The Bohr Model uses a 2-dimensional approach to show electron positions and
levels. (Note -that the atom in reality is 3-dimensional)
Nucleus
st
1 shell
nd
2 shell
rd
3 shell
Bohr Model
Adapted from http://www.sciencespot.net/Media/atomsfam.pdf
Electrons orbit around the atom nucleus at different levels or shells. For
example, see chart below with electron values taken from Bohr Model Handout.
Each shell (or level) is restricted to the number of electrons it can contain.
1. The first shell surrounding the nucleus never contains more than 2
electrons. (Note -hydrogen is the only atom to possess only 1 electron)
2. The second shell may contain up to 8 electrons, but never more than 8.
(Note oxygen has only 6 electrons in second shell while phosphorus has 8)
3. The Octet Rule states -the outer electron shell is most stable when it has 8
electrons. (Note –there are some atoms that contain 7 electron shells or
level)
How to draw a Lithium atom?, First, look at the Periodic Table. Second,
determine the number of protons (Look @ the atomic number). Then determine
the number of neutrons (Atomic mass – atomic number). Then determine the
number of electrons (Look @ the atomic number). Plot in the Bohr model.
Li
Lithium
A tomic
7 weight
Try it on your own: look at the periodic table for atomic number and weight to
determine the proton, neutron and electron. And plot in a Bohr model.
1. Carbon 5. sulfur
2. Nitrogen
3. Chlorine
4. sodium
For example, the sulfur atom has 3 electron shells and therefore 3 energy levels.
Negatively (-) charged electrons are attracted to the (+) positively charged
protons in the nucleus.
It takes energy to push electrons away from the (+) positively charged nucleus
and keep them in their own shell or orbit.
The farther away from the nucleus the more energy it takes to keep electrons in
their own shell.
Therefore -the farther away from the nucleus the greater the amount of
energy contained in the electron shell.
The Periodic Table of Elements is a table that organizes all the known elements
(atoms) according to certain characteristics like their atomic number, the number of
electron shells, and other characteristics.
Isotopes
Textbook definition -Isotopes are atoms of the same element that differ in the
number of neutrons. (Remember that all atoms of the same element have the same
number of protons)
Another definition could be -Isotopes are atoms of the same element which have
the same Atomic Number, but different Mass Numbers. WHY? (Remember that the
Mass Number of an atom is the number of protons plus the number, of neutrons)
Isotopes differ physically, but behave in a similar fashion both chemically and
physically.
Many elements found in nature have several isotopes; however, a great many
isotopes have been made by man.
The carbon atom has three common isotopes that can be written as:
Definitions
Textbook states -a molecule is the smallest part of a compound that still has the
properties of the particular compound.
In practice these two terms (compound and molecule) can be used interchangeably.
During chemical reactions where glucose is broken down, electrons shift their
energy levels and energy is released.
Ionic Bonding
2. CI (chloride) atom
Td
Has 7 electrons in its outer (3 ) shell and tends to be an
electron acceptor
By accepting 1 more electrons it its outer shell it will have 8.
When Na atom and CI atom come together -an electron is transferred from the
Na atom to the Cl atom.
NaCI or table salt is an ionic compound held together by ionic bonding -the
attraction between positive and negative ions.
Covalent Bonding
1.) The H atom has only 1 electron shell which needs 2 electrons to be complete.
2.) When 2 hydrogen atoms come together they share their electrons so that
each atom now has a complete outer shell (Remember the 1 st electron shell is
complete with only 2 electrons)
3.) 1 pair of electrons is shared and this is called a single covalent bond.
Water
Water is truly a remarkable molecule and compound.
It has several properties that make it essential for the survival of life on earth.
1. Hydrogen Bonding
A. The water molecule is V-shaped (see figure below) and this shape results
in a polarity (uneven charges) with the 2 hydrogen atoms being slightly
(+) positive and the oxygen atom being slightly (-) negative.
Hydrogen bonds form between slightly positive (δ+) and slightly negative (δ–) charges of
polar covalent molecules, such as water.
B. This polarity allows a water molecule to form a weak bond with other
water molecules and other atoms and molecules.
C. The slightly (+) positive hydrogen atom in one water molecule is attracted to
the slightly (-) oxygen atom in an adjacent water molecule.
D. Due to hydrogen bonding, water molecules cling together and give water many
of its important properties.
I. Note that hydrogen bonding is not unique to water -but occurs in other
molecules (like DNA) that possess hydrogen atoms.
REMINDERS:
Let’s do this!
D. Post-test/Evaluation
Directions: Read carefully and answer the following questions. Answer on separate
sheet of paper. This is a graded exam. This test will evaluate how much you effort to
learn this topic.
3. Many elements, such as hydrogen and carbon, have several isotopic frms which
statement does not characterized isotopes?
a. They have the same number of electrons
b. They have the same atomic number
c. They have the same number of neutrons
d. They have identical chemical properties
7. An atom has an atomic number of 19 and a mass number of 39. This atom will have
a. 19 neutrons b. 39 neutrons c. 20 electrons d. 20 neutrons
8. In ionic bonding,
a. electrons are transferred from one atom to another.
b. the charge of the ion does not play a role in the bond.
c. only non-polar molecules are involved.
d. two hydrogen atoms share one pair of electrons.
12. Hydrogen bonds form between molecules containing _________ bonds; the
hydrogen bond is between a hydrogen atom of one molecule and a partially
_________ charged atom of another.
a. polar covalent; negatively
b. nonpolar covalent; negatively
c. nonpolar covalent; positively
d. polar covalent; positively
13. cation is
a. a molecule that conducts electricity when placed in solution.
b. an alteration in the three-dimensional structure of a protein.
c. a positively charged ion.
d. a combination of atoms held together by chemical bonds.
14. An anion is
a. a molecule that conducts electricity when placed in solution.
b. a negatively charged ion.
c. a combination of atoms held together by chemical bonds.
18. Molecules that form when electrons are shared unequally between atoms are
called?
a. salt molecules.
b. polar molecules.
c. nonpolar molecules.
d. lopsided molecules.
19. These bonds form when an electron is shared between two elements and are t he
strongest and most common form of chemical bond in living organisms.
a. hydrogen bond
b. ionic bond
c. covalent bond
d. all of the above
E. References
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