BIOCHEMISTRY 20th Notebook by shivansh_studies
BIOCHEMISTRY 20th Notebook by shivansh_studies
20th NOTEBOOK
By -
&Shivansh-studies
-
Couch
Directly Proportional
:
Exception Ribosomes :
(RNA that acts
as Straight line
.
Catalyst
-otojactors
=
Enzymes Reg Specific lofactors
Carbonic Anhydrase ; Alp Carboxy Peptidase & Temperature : Bell Shaped Curve
Zincresium
,
Rate
Kinase , Phosphatas , Enolase
if Temp > 40. sharp fall in
Class] : ORIDO-REDUCTASE
① Kevatan Sulphate
-
Subclass : Dehydrogenase Peroxidase
Oxidase Catalase
Corneal Transparency
Oxygenase Reductase ② Hyaluronic Acid
I
Class : HYDROLASE * Suicide Inhibition ③ Chondroitin Sulphate
-
Mem)
-
ClassE :
LIGASE Ex : Synthetase , Carbonylase .
·
L Acts as
Receptor (f in Plasman
-
It Channel
⑤ (Anticoagulant)
+ .
Pass I : TRANSLOCASE Ex : H Pump , Heparin
-
* Theories
of Mechanism
of Action of Enzymes ① : Rate
Limmiting Enzymes
① Defect in
GAG degradation .
Cooperative binding
. ② All MPS are Autosomal Recessive
# Factory
affecting Enzyme Activity
-
A in Sub
① Substrate Concentration
: -
km : Michaelis Constant
. >
- Enzymes in dephosphyralated state .
* HURLER's Disease (MPSIH)
Affinity towards Substrate * In
Fasting State XL-iduronidase defect .
defect
&
* HUNTER'S Disease (MPSI) * All MPS have : Course Facial Features, Short Stature , Dysostosix Multiplex .
* SANFILIPPO DisEASE (MOS III) MPS 1 - M MPS IS MPS I MPS III Lamy MPSII
IS
DEGRADATION.
Mental Deficiency Corneal Clouding Mental Deficiency Mental Deficiency Correal
Glucose Transporters
:
#
> ↓ Renal
Threshold
Mutated SPLT2-
Renal Glycosuria
the Benedicty Test .
*
During well Ged
state >
- Insulin :
Glucagon ratio is
High
Syn.
Ratio
* Body in
Fasting State
: Low insulin :
Glucagon
Pathways Act :
Glycogenolysis Gluconeogenesis.
,
# Pyruvate Dehydrogenase
:
Site : Mitochondria
3 enzymes : E,
Pyruvate Dehydrogenase
E2 Dihydrolipoy/ transacetylase
Es Dihydrolipomide dehydrogenase
.
insulin
# GLYCOLYSID/EMP PATHWAY :
Enzyme induced by
:
Glucokinase * Clinical
Significance
:
level I
Substrates
* * Enzymes Enzyme that regulates glacse LeighSyndrome
Glucose Hexokinase/Glucokinase (irreversible) Rate
limiting Step of Glycolysis
: PFK-I Metabolic Defect (PDU comple)
S
3 Phosphoglycerate 3 phosphoglycerate Mutase in Arrobic Cond" /molGlu
= 7 ATP Lautic Acidosis .
5 = 5 ATP
32 ATP
2 Phospho glycerate Enolase .
2 Pyruvate = 2 NADH = [x 2 ·
-
-
Mitochondria
# Gluconeogenesis :
Cytoplasm +
Glucose
-
6 phosphate
.
>
- Lactate :
Glucose lactate Cycle [CORI's CYCLE]
>
-
Glucose Alanine Cycle [Cahill Cycle]
CoA
>
-
Glycerol ,
Propionyl .
# Galactose Metabolism :
-
Metabolised in Liver
. (Liver Function Test is used
for Galactose intolerance)
in Fructose Metabolism Phosphofructokinase is not involved
.
I 0
Liver
GSD :
Type ,
III
,
VI
,
Not
much significance
just gothrows
one
cycle Amphibolia Patway Fluroacetate inhibits Aconitase
ICA .
:
# >
-
• Succinyl-CoA
Vitamins Pantothenic Acid In CoA
• Succinate : >
-
FCCP
① Chemical : 2, 4 Dinitropherol ; Dinitrocresol ; Aspirin ,
Chain F A
② Physiological Thermogenin ;
:
Thyronine; Long
. .
③
Conophores :
Valinomycin ; Gramicidin
Mixed diet 85
Respiratory quotient
0
#
.
:
>
100 0 81
.
7 0 71
.
70 66 .
Excurs Carb diet 11 . 00
# phospholipids Sphingolipids
#Linds
#
:
Pigment
Refinitis a
>
- Sphingomylien
Fetal Brain &
>
- DHA func" :
Development of Rena ↓
Po-+
Omega Jatly
Acids
* Trans
Fatty .
Acid * 3 Ceramide + Choline
↓ Inflammation
.
- Coconut Oil
· Saturated Fatty Acid
· PUFA - Safflower - Sunflower Oily
· +
Linoleic Acid Safflower Oil
·
Alpha Linoic Acid - Flan Seed Oil
·
MUFA- >
Mustard/Rapeseed oil
· Trans Fat >
-
Vanaspati)Dalda
# B-oxidation of Fatty Acids :
A
Acyl CA lacetyl C
FAD
FADUL
3 by Acyl CoA
Dehydrogenase 10 ATP
Any16 A Acetyl A
# Jamacian
Vomiting Sickness
:
Fruit.
# Gaucher's Disease :
dlf Consumption of Unripe
Ackes
Fatal Condition
M/C lysosomal storage disorder Sudden
Vomiting ;
.
Inhibite
Bleeding Tendency ,
Pain Toxin :
Hypoglycin -
>
Acyl CoA
-
Leads to
;
.
>
- Defect in
Phytanoy/CA hydroxylase
>
-
Pigmentary Retinopathy >
- Kathyosis
>
- Peripheral Neuropathy >
- Arrhythmia
And Scrum
* FA oridation is a source
.
of ATP for Gluconeogenesis
dX : ↑
-
Phytanic
Preparatory phase : Activation
of FA (lytoplasm)
- use 3-
t 2-poy # Ketone Body Synthesis :
From port
of FA >
-
Exclusively in liver Mitochondria
.
Cytoplasm to Mitochondria
>
- Mitochondrial HMG COA
Synthase >
- Rate
Limiting Enzyme .
4 Rate
CPT- : Limit .
Enzyme >
- Acetoacetate
& B-OH-Butyrate are used in entrahepatic tissue
.
Carboxylase (R(2)
Malony/CoA (32)
etetoA
Acaty/Co-A)_
At # Type I Hyperlipoprotienimias :
Disease
#Tangier'
:
ADP
Biotin
CO2
Familial Hypercholestrolemia
#Cetrol
Synthesis :
Animal Sterol
# Lipoprotions
:
# Amino Acids :
B
fibrinopeptide A
and
1 . Alzheimer's Discuss 5 .
Huntington's Disease
2 . Parkinson's Disease .
1 Fronto temporal Dementia
Lateral Sclerosis
.
3 Beta thalassemia 1.
Amyotrophic
4 .
Cystic Fibrosis 0 .
Dementic with
.
Lewy Body
* PEST
sequence is
needed
for protosomal degradation
Proline (P) Glutamate (2) (s) Threonine (T)
# protienemas
Hypno . Serive
AKA Death
Kiss
of .
*
Collagen
-
:
HyperAmmonia
I > CPSI
-
defect M/c Metabolic disorder
alwo AA .
HyperAmmonia II
- OTC defet >
- Biochemical defect in
Phenylalanine
HHH Syndrome >
- Ornithine transporter Hydroxylase .
Citrulinemia I e Avigino
Succinate Synthetase & Increased Phenylalanine
Citrulinemia II - Citrin Transporter defect forms is Phenyl lactate
Arginiosuccinic
Aidaria -
Arginiosuccinate Lyase (i) Phenylacetate
Argininemia ->
Arginase defect
.
(MousyBody
* M/C Urea cysle defect Hyperammoremia #I
: & Decreases Tyrosine ↓ Melanin
#Transamination
.
>
-
&
*
Diagnosis of
Urea Cycle disorders :
Hypopigmentation
& amino acid (Fair Skin Blonde Hair)
·
② Increased Blood NHS (Ammonia)
② Check Blood pH
. Neurological Deficite
if decreased :
Guthrie's Test/Bacterial
lutarate ↑ Citrulline Citrulinemia
Specific AA& Inhibition
: :
(i)
Test
↑ Ornithine :
HHH Syn (ii) Ferric Chloride Test
>
- Mechanism
.
.
Succinic Acideria
Glutamine is transport form of ammonia (r) Genetic Mutation Studies
-
.
>
- -
-
in most
organe (in
.
muche +
Alanine) i Non Specific AAY
# Treatment :
>
-
Decarbonylation of Glutamic
Acid : GABA plasma Orotic Acid >
- Phenylalanine Restricted diet
Increased
>
-
Deamination of Glutamic And : X
Ketoglutarate .
:
Hyperammonia 2
>
- Synthetic Cofactor BH4
& Hyperammonia 1
Urea/Ornithine/Kreb's decreased Concentrate neutral
Henseleit Cycle of large
:
# : +
Mitochondria
. amino acid
.
Organ
Liver
Organelles Cytoplasm
:
: ,
*
Proline , Hydroxyproline ,
Threonine , Lysine
does not transamination.
undergo
E -> Alanine increase in plasma during starvation
>
-
Glutamine increases in plasma duringthyper
ammonia .
Rate COS I
limiting Step :
Allosterin activator
N-Acetyl Glutamate
.
:
# Kaptonuvia
:
(Homogenticate Duidass Defect) # Hartmup's Disease :
# Glutathione
:
- -
in brain , intestine
>
- Skin & Soleva Black
Pigmentation BOAT I not .
Synthesized
Fun" : Amino acid transport ,
Kidneys
>
- Intervertebral Disc (Ochronosis) Tryptophan accumulation >
-
Conjugation of phase
2 of Xerobiotic Run
.
-
Benzoquinoacetate Excreted
through Kidney Blue discolouration
of Diaper >
- free Radical scavenger .
4 Reductase(Flavo
protis
Black discolouration of urive on
standing Neurological deficits , intermittent * Erythrocytic Glutathione
you alkalanisation
.
-
Ataxia .
Pellagra like
Syp
-
Indicates Riboflavin (B2) Status
.
) Ferric Chloride Test (i) Cystinuria (ii) Albinism Tt Lipid Soluble ester
of Phosphatidylserine
Cysteine
:
T ,
* Treatment
Nitsinone (inhibits PUPP) & Cystiens Disorders
# Methionine
: :
.
Hydroxylase .
#
Arginine used to synthesize
Nitric Oxide
Pheochromocytoma (i)
:
#
Folate
Plasma/Urine Metanephrines * Trap Deficiency of B12
:
Investigations
:
(ivs Or withine
in
follow
Pheochromocytoma This
up Neuroblastoma and
. can be used to
ganlioneuma .
&
diagnose
Ornithine
Lysine
Arginine
3 Kidney
Dipeptide
as
.
(i) Albinism : Tyrosinase
BIRD
LIMSUD :
CoA
* Albinism :
Tyrosinase defect .
* Cystinosis :
Lysosomal Storage Disorder (ii) Isovalerie :
Isovalevy)
Aciduria Dehydrogenase
.
- -
. () Homocystinuria : Cystathionine
Lacrimatio Photophobia Corneal .
, Bone marrow suppression ,
Opacity Beta .
Synthase
# Tryptophan :
* Maple Syrup Urine Disease :
(v) Pheny/Kentonuria Phenylalanine :
Hydronylash
- .
Ketone Glucose
Lis Catabolic
dehydrogenase defect
>
- a BCKA
.
Oxidase
RLE
.
RLS :
3-04 authravitate - >
- NAD + (VitBs) Floppy Baby with bouts of Hypertonia
GPRTase
↓ Hypotonia Maple Syrup/Burnt Sugar
.
(v) Tyrosinemia I :
Fumary/ Acetate
Hydrolase
* Pyridonal Phosphate deficiency >
- By (Niacin] deficiency or Caramel odour
.
(Pellagra symptoms)
like
Investigation : Urine +ve
for Rothera's Test .
Transaminase
* Serotonin synthesized in
Argentaffin cells brain , platalets 8417 Tt : Thiamine Supplementation -
.
# arcinoidumor
: # Glyine .
Creative
Glycine +
Arginine + Mettionine .
=
Cells.
Tumor of Argentaffin
>
-
Type I Tyrosinemia
:
#
Hyper Keratotic
Non pruvidia plaques
soles .
our
of foot
# Homocystinuria : Prove to thromboembolism
-
Nitroprusside
Investigation Ganide
: # Alkaptonuria :
-
Test -
Black discolouration
Pinna
of # DNA polymerases in
Prokaryote
① DNAP1 (klenowpolymerase)
# Molecular Biology
:
* Hereditary Orotic Aciduria :
(AR)
-
aka
Kornberg's Enzyme
-
in TyreI :
Only OMP
decarbonylase .
strand
③ DNAP3
: Synthesis of leading
* Got
:
# Structure of DNA : Synthesis of Okazaki
Fragments.
Hyperuricemia Uric Acid Nephrolithiasis. DSDNA-1 75
turns/145BP+ Histore #DNA Polymerases Lukaryotes
:
.
,
.
Investigation
:
Arthroscopy Synovial Slid
+ Exam
Beads on
string
.
V Mitochondrial DNA synth . + Proofreading
2 . Add to
phytohemagglutinin
E Culture Medium
Cultura at for 3
days
.
·
3 .
37 C
E Hypotonic Saline
.
5
Digest with trypsin & stain
with Giemsa
J Analyse Metaphase
.
Spread :
# DNA sequencing
.
!
Capping atSend Hybridization
(i) Pyrosequencing
:
2
Poly A
failing at 3 end >
- Applications :
DNA
sequencing technique
.
deletion
.
3
Splicing of exons
&
removal
of introns
by spliceosomes 2) Study Micro
gene Principle : Biolumiscence
structural abnormalities
Translation (ii) Numerical &
:
#
-
> Protien
RNA- (in Ribosomes (iv) Mapping of Gene
.
Steps of translation
:
#
(uses2iPOn) Banding
Techniques
:
1.
Charging of RNA
.
2 Initiation . (805 Ribosomes)
A-Site.
3. Elongation :
Binding of new Aminoacyl tRNA at
3 Termination :
.
Biology Techniques
:
# Molecular
>
- Western Blot : Protiens.
Microarray
:
2 .
DNA
Microarray
CDrA Microarray
Protien Microarray
.
Vitamin (Deency
#tamins Vitamin E &
: K # :
③
Scurry
·
① Tamin A Follicular
Hyperkeratosis
·
Gastric irritation
-
is Earliest : loss
of
vision to
green light
OxalateStones
.
his stSymptom Night : Blindne
Bitot's Spots
ii) Conjuctival Xerosis ,
④ Vitamin B
&
Vitamin ) :
Pseudotumor Cerebri
Toxicity
:
Hepatomegaly ,
Cirrhosis
② Vitamin D :
Ostermatacia transketolase
After epiphysis closure Indicator for Thiamine def Erythrocyte
: :
>
-
Reductase
* Biochemical changes in Rickets :
- Indicator for Riboflavin def Erythrocyte Glutathione
: .
Flushing (MX
:
Aspirin ; Caropiprant) Gopalan's Burning Foot Syndrome
intolerance , Hyperuricemia
Glucose * Folic Acid By Toxicity
.
Macular Edema Megaloblastic Anemia
Vit D richest
Best Screening
source
Test :
:
250H
Halibut liver oil
cholecalciferol.
.
* Niacin can cause
Non
Vegans
Cobalamin
: :
*
Vessels ↑ BP
Contraction of Blood .
Pyridoxine (vitBs)
3
, * >
-
Megaloblastic Anemia
Calcinosis.
Toxicity Sensory Neuropathy
:
>
- Homocystenemia
seemi
a
Malonia Aciduria
Deficiency Pellagra
: like
symptoms
>
-
Methy/
Vegans
Convulsions Degeneration
Peripheral Neuropathy - Subacute Combined
Anemia ,
Oxaluria
, Homocystinuria >
- Bilateral Peripheral Neuropathy
Disease :
Diagnosis of Wilson's
S Ceruloplasmind
Biochemistry of Fee Fasting State :
>
-
.
# ux
>
- 24hr In excretion &
Standard)
>
- Liver cn
Assay (Gold
Histidine &
>
- Urine excrction of Smethy
* Selenium :
-
Nut
Rich Source Brazil
:
Keshan disease
Deficiency
- >
Kashinbeck disease .
* Line
-
Prostatic Fluid
.
# Imp Tests :
fine :
Metaloenzyme
Spermatogenesis
Deficiency
:
Hypogensia
Acrodermatitis Enteropathica
.