A BioWDL variantcalling pipeline for germline DNA data. Starting with FASTQ files to produce VCF files. Category:Multi-Sample
A pipeline for somatic variantcalling. Category:Single-Sample
Nextflow pipeline for whole-genome sequencing (WGS) analysis and variant calling in bacterial genomes using Illumina data, supporting de novo assembly and reference-based analysis.
A Nextflow pipeline for SARS-CoV-2 genome assembly and analysis from Illumina reads—includes QC, mapping, variant calling, consensus generation, lineage annotation, and phylogenetics.
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