Skip to content

Pull requests: broadinstitute/gatk

New pull request New
140 Open 4,436 Closed
140 Open 4,436 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Reviews
Filter by reviews
No reviews Review required Approved review Changes requested
Assignee
Filter by who’s assigned
Assigned to nobody Loading
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Pull requests list

Fix Funcotator transcript override functionality
#9214 opened Jun 23, 2025 by kockan Loading…
4
VS-1657 - Adding new annotations to the sites-only VCF.
#9212 opened Jun 18, 2025 by gbggrant • Draft
3
Initial CLAUDE.md [VS-1677]
#9209 opened Jun 16, 2025 by mcovarr Loading…
5
BQSR: restore ability to specify custom covariates and to disable standard covariates. (Take 2)
#9206 opened Jun 12, 2025 by takutosato Loading…
1
testing new htsjdk and picard
#9200 opened Jun 5, 2025 by lbergelson • Draft
DDO-4137 update to read artifacts from GAR
#9198 opened Jun 3, 2025 by ungwudik Loading…
12
Improved handling of intersecting groups in SVStratify
#9185 opened May 23, 2025 by mwalker174 Loading…
2
test yossi's fasta change
#9179 opened May 19, 2025 by lbergelson • Draft
3
Output exit result to stderr instead of stdout to allow pipelines
#9176 opened May 15, 2025 by pontushojer Loading…
1
5
Potential fix for code scanning alert no. 15: Implicit narrowing conversion in compound assignment
#9146 opened Apr 13, 2025 by lbergelson Loading…
1
Update hadoop 3.3.6 -> 3.4.0
#9132 opened Mar 28, 2025 by lbergelson Loading…
2
Add a WDL to annotate any vcf
#9122 opened Mar 22, 2025 by RoriCremer • Draft
CRAM 3.1 read support
#9095 opened Feb 11, 2025 by cmnbroad • Draft
2
Fixing what looks like a a bug in MendelianViolationEvaluator
#9080 opened Jan 15, 2025 by lbergelson Loading…
1
[DO NOT MERGE]
#9045 opened Nov 15, 2024 by jamesemery Loading…
15
Yyu test 1
#9026 opened Oct 30, 2024 by yonghaoy • Draft
Create tools for SV VCF cleaning
#8996 opened Oct 9, 2024 by kjaisingh • Draft
@kjaisingh
22
FlowFeatureMapper speed improvements
#8982 opened Sep 16, 2024 by dror27 Loading…
12
Bundle support for FeatureInputs, references; add CreateBundle tool.
#8944 opened Aug 6, 2024 by cmnbroad • Draft
7
Add keep-contig-names parameter
#8865 opened Jun 6, 2024 by gokalpcelik • Draft
3
Funcotator - removing the required transcript file
#8863 opened Jun 5, 2024 by jonn-smith • Draft
35
Changed flow allele filtering in Mutect2 to work separately on the tumor and the normal samples
#8855 opened Jun 1, 2024 by ilyasoifer • Draft
Rc vs 1365 hatcher testing parquet
#8845 opened May 23, 2024 by RoriCremer • Draft
Added long read walkers from long-running branch.
#8799 opened Apr 29, 2024 by jonn-smith Loading…
32
add echocallset as an option for integration test
#8757 opened Apr 1, 2024 by RoriCremer Loading…
ProTip! no:milestone will show everything without a milestone.