2N80 | pdb_00002n80

p75NTR DD:RhoGDI


Experimental Data Snapshot

  • Method:&nbspSOLUTION NMR
  • Conformers Calculated:&nbsp100&nbsp
  • Conformers Submitted:&nbsp10&nbsp
  • Selection Criteria:&nbspstructures with the lowest energy&nbsp

wwPDB Validation&nbsp &nbsp3D Report&nbspFull Report


This is version 1.1 of the entry. See complete&nbsphistory.&nbsp


Literature

Structural basis of death domain signaling in the p75 neurotrophin receptor

Lin, Z.,&nbspTann, J.Y.,&nbspGoh, E.T.,&nbspKelly, C.,&nbspLim, K.B.,&nbspGao, J.F.,&nbspIbanez, C.F.

(2015) Elife&nbsp4: 11692-11692

  • DOI:&nbsphttps://doi.org/10.7554/eLife.11692
  • Primary Citation of Related Structures: &nbsp
    2N7Z, 2N80, 2N83, 2N97

  • PubMed Abstract:&nbsp

    Death domains (DDs) mediate assembly of oligomeric complexes for activation of downstream signaling pathways through incompletely understood mechanisms. Here we report structures of complexes formed by the DD of p75 neurotrophin receptor (p75(NTR)) with RhoGDI, for activation of the RhoA pathway, with caspase recruitment domain (CARD) of RIP2 kinase, for activation of the NF-kB pathway, and with itself, revealing how DD dimerization controls access of intracellular effectors to the receptor. RIP2 CARD and RhoGDI bind to p75(NTR) DD at partially overlapping epitopes with over 100-fold difference in affinity, revealing the mechanism by which RIP2 recruitment displaces RhoGDI upon ligand binding. The p75(NTR) DD forms non-covalent, low-affinity symmetric dimers in solution. The dimer interface overlaps with RIP2 CARD but not RhoGDI binding sites, supporting a model of receptor activation triggered by separation of DDs. These structures reveal how competitive protein-protein interactions orchestrate the hierarchical activation of downstream pathways in non-catalytic receptors.


  • Organizational Affiliation:&nbsp

    Department of Physiology, National University of Singapore, Singapore, Singapore.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Tumor necrosis factor receptor superfamily member 1694Homo sapiensMutation(s): 0&nbsp
Gene Names:&nbspNGFR,&nbspTNFRSF16
UniProt & NIH Common Fund Data Resources
Find proteins for&nbspP08138&nbsp(Homo sapiens)
Explore&nbspP08138&nbsp
Go to UniProtKB: &nbspP08138
PHAROS: &nbspP08138
GTEx: &nbspENSG00000064300&nbsp
Entity Groups &nbsp
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP08138
Sequence Annotations
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Rho GDP-dissociation inhibitor 1174Homo sapiensMutation(s): 0&nbsp
Gene Names:&nbspARHGDIA,&nbspGDIA1
UniProt & NIH Common Fund Data Resources
Find proteins for&nbspP52565&nbsp(Homo sapiens)
Explore&nbspP52565&nbsp
Go to UniProtKB: &nbspP52565
PHAROS: &nbspP52565
GTEx: &nbspENSG00000141522&nbsp
Entity Groups &nbsp
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP52565
Sequence Annotations
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method:&nbspSOLUTION NMR
  • Conformers Calculated:&nbsp100&nbsp
  • Conformers Submitted:&nbsp10&nbsp
  • Selection Criteria:&nbspstructures with the lowest energy&nbsp

Structure Validation

View&nbspFull Validation Report



Entry History&nbsp

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2015-12-23
    Type: Initial release
  • Version 1.1: 2024-05-01
    Changes: Data collection, Database references